liana.plotting.connectivity¶
- liana.plotting.connectivity(adata: AnnData, idx: int, spatial_key='spatial', connectivity_key='spatial_connectivities', size=1, figure_size=(5.4, 5), return_fig: bool = True)¶
Plot spatial connectivity weights.
- Parameters:
- adata
Annotated data object.
- spatial_key
Key in adata.obsm that contains the spatial coordinates. Default is ‘spatial’.
- connectivity_key
Key in adata.obsp that contains the spatial connectivity matrix. Default is ‘spatial_connectivity’.
- size
Size of the points
- figure_size
Figure x,y size
- return_fig
bool whether to return the fig object.
- Returns:
- A plotnine.ggplot instance