liana.utils.get_factor_scores

liana.utils.get_factor_scores(adata: AnnData | MuData, obsm_key: str | None = None, obs_keys: str | None = None)

Extract factor scores from an AnnData object.

Parameters:

adata

Annotated data object.

obsm_key: str

Key to use when extracting factor scores from adata.obsm

obs_keys: list

List of keys to use when extracting metadata from adata.obs If None, no metadata is extracted. Default is None.

Returns:

Returns a pandas DataFrame with the factor scores.