Index _ | A | B | C | D | E | F | G | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | Z _ __call__() (liana.method.bivariate method) (liana.method.cellchat method) (liana.method.cellphonedb method) (liana.method.connectome method) (liana.method.cross_pcf method) (liana.method.geometric_mean method) (liana.method.inflow method) (liana.method.logfc method) (liana.method.lric method) (liana.method.MistyData method) (liana.method.natmi method) (liana.method.rank_aggregate method) (liana.method.scseqcomm method) (liana.method.singlecellsignalr method) _SCORE (liana.method.AggregateClass attribute) A adata_to_views() (in module liana.multi) add_cols (in module liana.method) (liana.method.AggregateClass attribute) aggregate_meta (in module liana.method) AggregateClass (class in liana.method) annulus_plot() (in module liana.plotting) axis (liana.method.MistyData attribute) B build_prior_network() (in module liana.method) by_sample() (liana.method.AggregateClass method) C circle_plot() (in module liana.plotting) complex_cols (in module liana.method) (liana.method.AggregateClass attribute) compute_global_specificity() (in module liana.method) connectivity() (in module liana.plotting) contributions() (in module liana.plotting) copy() (liana.method.MistyData method) D describe() (liana.method.AggregateClass method) describe_metalinks() (in module liana.resource) df_to_lr() (in module liana.multi) dotplot() (in module liana.plotting) dotplot_by_sample() (in module liana.plotting) E enforce_obs (liana.method.MistyData attribute) estimate_elbow() (in module liana.multi) estimate_metalinks() (in module liana.method) expand_coordinates() (in module liana.utils) F feature_by_group() (in module liana.plotting) filename (liana.method.MistyData attribute) filter_view_markers() (in module liana.multi) find_causalnet() (in module liana.method) fit() (liana.method.sp.LinearModel method) (liana.method.sp.RandomForestModel method) (liana.method.sp.RobustLinearModel method) (liana.method.sp.SingleViewModel method) fun (in module liana.method) G generate_lr_geneset() (in module liana.resource) generate_toy_adata() (in module liana.testing) generate_toy_mdata() (in module liana.testing) generate_toy_spatial() (in module liana.testing) genericMistyData() (in module liana.method) get_factor_scores() (in module liana.utils) get_hcop_orthologs() (in module liana.resource) get_meta() (liana.method.AggregateClass method) get_metalinks() (in module liana.resource) get_metalinks_values() (in module liana.resource) get_method_scores() (in module liana.method) get_variable_loadings() (in module liana.utils) get_weighted_matrix() (liana.method.MistyData method) getdoc() (liana.method.AggregateClass method) (liana.method.MistyData method) (liana.method.sp.LinearModel method) (liana.method.sp.RandomForestModel method) (liana.method.sp.RobustLinearModel method) (liana.method.sp.SingleViewModel method) I importances (liana.method.sp.SingleViewModel attribute) instances (in module liana.method) (liana.method.AggregateClass attribute) interactions() (in module liana.plotting) interpolate_adata() (in module liana.utils) isbacked (liana.method.MistyData attribute) K kang_2018() (in module liana.testing) kwargs (liana.method.sp.SingleViewModel attribute) L liana.method module, [1], [2], [3] liana.method.sp module liana.multi module liana.plotting module liana.resource module liana.testing module liana.utils module LinearModel (class in liana.method.sp) lrdata_to_mudata() (in module liana.multi) lric_lineplot() (in module liana.plotting) lrMistyData() (in module liana.method) lrs_to_views() (in module liana.multi) M magnitude (in module liana.method) magnitude_ascending (in module liana.method) magnitude_specs (liana.method.AggregateClass attribute) mdata_to_anndata() (in module liana.utils) method_name (in module liana.method) methods (liana.method.AggregateClass attribute) MistyData (class in liana.method) mod_names (liana.method.MistyData attribute) model (liana.method.sp.SingleViewModel attribute) module liana.method, [1], [2], [3] liana.method.sp liana.multi liana.plotting liana.resource liana.testing liana.utils N n_mod (liana.method.MistyData attribute) n_obs (liana.method.MistyData attribute) n_var (liana.method.MistyData attribute) n_vars (liana.method.MistyData attribute) neg_to_zero() (in module liana.utils) nmf() (in module liana.multi) O obs (liana.method.MistyData attribute), [1] obs_keys() (liana.method.MistyData method) obs_names (liana.method.MistyData attribute) obs_names_make_unique() (liana.method.MistyData method) obs_vector() (liana.method.MistyData method) obsm (liana.method.MistyData attribute) obsm_keys() (liana.method.MistyData method) obsm_to_adata() (in module liana.utils) obsmap (liana.method.MistyData attribute) obsp (liana.method.MistyData attribute) P permute (in module liana.method) predictions (liana.method.sp.SingleViewModel attribute) process_scores() (in module liana.method) pull_obs() (liana.method.MistyData method) pull_var() (liana.method.MistyData method) push_obs() (liana.method.MistyData method) push_var() (liana.method.MistyData method) Q query_bandwidth() (in module liana.utils) R RandomForestModel (class in liana.method.sp) reference (in module liana.method) reference() (liana.method.AggregateClass method) RobustLinearModel (class in liana.method.sp) S sample_lrs() (in module liana.testing) seed (liana.method.sp.SingleViewModel attribute) select_resource() (in module liana.resource) shape (liana.method.MistyData attribute) show_methods() (in module liana.method) show_resources() (in module liana.resource) SingleViewModel (class in liana.method.sp) spatial_key (liana.method.MistyData attribute) spatial_neighbors() (in module liana.utils) spatial_pair_proximity() (in module liana.utils) specificity (in module liana.method) specificity_ascending (in module liana.method) specificity_specs (liana.method.AggregateClass attribute) strings_to_categoricals() (liana.method.MistyData method) T target_metrics() (in module liana.plotting) tileplot() (in module liana.plotting) to_anndata() (liana.method.MistyData method) to_tensor_c2c() (in module liana.multi) translate_column() (in module liana.resource) translate_resource() (in module liana.resource) U uns (liana.method.MistyData attribute) uns_keys() (liana.method.MistyData method) update() (liana.method.MistyData method) update_obs() (liana.method.MistyData method) update_var() (liana.method.MistyData method) V var (liana.method.MistyData attribute) var_keys() (liana.method.MistyData method) var_names (liana.method.MistyData attribute) var_names_make_unique() (liana.method.MistyData method) var_vector() (liana.method.MistyData method) varm (liana.method.MistyData attribute) varm_keys() (liana.method.MistyData method) varmap (liana.method.MistyData attribute) varp (liana.method.MistyData attribute) view_names (liana.method.MistyData attribute) W write() (liana.method.MistyData method) write_h5mu() (liana.method.MistyData method) write_zarr() (liana.method.MistyData method) Z zi_minmax() (in module liana.utils)
