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Reference
Prior Knowledge
Single-cell Vignettes
Steady-state Ligand-Receptor inference
Intercellular Context Factorization with Tensor-Cell2cell
MOFAcellular - Multicellular Factor Analysis
Intercellular Context Factorization with MOFA
Differential Expression Analysis for CCC & Downstream Signalling Networks
Spatial Vignettes
Learning Spatial Relationships with MISTy
Spatially-informed Bivariate Metrics
Integrating Multi-Modal Spatially-Resolved Technologies with LIANA+
liana
Index
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Index
_
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A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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O
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S
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T
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Z
_
__call__() (liana.method.bivariate method)
(liana.method.cellchat method)
(liana.method.cellphonedb method)
(liana.method.connectome method)
(liana.method.geometric_mean method)
(liana.method.logfc method)
(liana.method.natmi method)
(liana.method.rank_aggregate method)
(liana.method.singlecellsignalr method)
__init__() (liana.method.MistyData method)
A
adata_to_views() (in module liana.multi)
B
build_prior_network() (in module liana.method)
C
connectivity() (in module liana.plotting)
contributions() (in module liana.plotting)
D
describe_metalinks() (in module liana.resource)
df_to_lr() (in module liana.multi)
dotplot() (in module liana.plotting)
dotplot_by_sample() (in module liana.plotting)
E
estimate_elbow() (in module liana.multi)
explode_complexes() (in module liana.resource)
F
find_causalnet() (in module liana.method)
G
generate_lr_geneset() (in module liana.resource)
genericMistyData() (in module liana.method)
get_factor_scores() (in module liana.utils)
get_metalinks() (in module liana.resource)
get_metalinks_values() (in module liana.resource)
get_variable_loadings() (in module liana.utils)
I
interactions() (in module liana.plotting)
interpolate_adata() (in module liana.utils)
L
liana
module
lrMistyData() (in module liana.method)
lrs_to_views() (in module liana.multi)
M
mdata_to_anndata() (in module liana.utils)
MistyData (class in liana.method)
module
liana
N
neg_to_zero() (in module liana.utils)
nmf() (in module liana.multi)
O
obsm_to_adata() (in module liana.utils)
S
select_resource() (in module liana.resource)
show_resources() (in module liana.resource)
spatial_neighbors() (in module liana.utils)
T
target_metrics() (in module liana.plotting)
tileplot() (in module liana.plotting)
to_tensor_c2c() (in module liana.multi)
Z
zi_minmax() (in module liana.utils)
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