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Tutorials
Steady-state Ligand-Receptor inference
Multi-Modal Ligand-Receptor Inference
Prior Knowledge
Spatially-informed Bivariate Metrics
Integrating Multi-Modal Spatially-Resolved Technologies with LIANA+
Learning Spatial Relationships with MISTy
Differential Expression Analysis for CCC & Downstream Signalling Networks
Intercellular Context Factorization with Tensor-Cell2cell
MOFAcellular - Multicellular Factor Analysis
Intercellular Context Factorization with MOFA
Inferring Cell–Cell Interactions at Single Cell Resolution
Installation
API
liana.method.cellchat.__call__
liana.method.cellphonedb.__call__
liana.method.connectome.__call__
liana.method.logfc.__call__
liana.method.natmi.__call__
liana.method.singlecellsignalr.__call__
liana.method.geometric_mean.__call__
liana.method.rank_aggregate.__call__
liana.method.bivariate.__call__
liana.method.MistyData
liana.method.genericMistyData
liana.method.lrMistyData
liana.multi.df_to_lr
liana.multi.to_tensor_c2c
liana.multi.adata_to_views
liana.multi.lrs_to_views
liana.multi.nmf
liana.multi.estimate_elbow
liana.plotting.dotplot
liana.plotting.dotplot_by_sample
liana.plotting.tileplot
liana.plotting.connectivity
liana.plotting.target_metrics
liana.plotting.contributions
liana.plotting.interactions
liana.utils.obsm_to_adata
liana.utils.mdata_to_anndata
liana.utils.zi_minmax
liana.utils.neg_to_zero
liana.utils.spatial_neighbors
liana.utils.get_factor_scores
liana.utils.get_variable_loadings
liana.utils.interpolate_adata
liana.resource.select_resource
liana.resource.show_resources
liana.resource.generate_lr_geneset
liana.resource.explode_complexes
liana.resource.get_metalinks
liana.resource.describe_metalinks
liana.resource.get_metalinks_values
liana.method.find_causalnet
liana.method.build_prior_network
liana.method.estimate_metalinks
Changelog
Contributing guide
References
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