liana.plotting.feature_by_group

liana.plotting.feature_by_group(adata=None, groupby=None, spatial_key='spatial', labels=None, feature=None, figure_size=(10, 6), normalize=True, percentile_scaling=None, show_counts=True, **kwargs)

Plot inflow scores for single feature across spatial coordinates.

Parameters:

• adata (AnnData (default: None)) – Annotated data object.

• groupby (str (default: None)) – Key to be used for grouping.

• spatial_key (default: 'spatial') – Key in adata.obsm that contains the spatial coordinates. Default is 'spatial'.

• labels (list[str] (default: None)) – List of labels to compare, from groupby.

• feature (str (default: None)) – From adata.var_names.

• figure_size (tuple (default: (10, 6))) – Figure x,y size

• normalize (bool (default: True)) – Normalize expression values between 0 and 1 for each cell type.

• percentile_scaling (tuple[int, int] | None (default: None)) – Tuple specifying percentiles for scaling.

• show_counts (bool (default: True)) – Show counts of expression cells (expression > 0).