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  • Tutorials
    • Steady-state Ligand-Receptor inference
    • Multi-Modal Ligand-Receptor Inference
    • Prior Knowledge
    • Spatially-informed Bivariate Metrics
    • Integrating Multi-Modal Spatially-Resolved Technologies with LIANA+
    • Learning Spatial Relationships with MISTy
    • Differential Expression Analysis for CCC & Downstream Signalling Networks
    • Intercellular Context Factorization with Tensor-Cell2cell
    • MOFAcellular - Multicellular Factor Analysis
    • Intercellular Context Factorization with MOFA
    • Inferring Cell–Cell Interactions at Single Cell Resolution
  • Installation
  • API
    • liana.method.cellchat.__call__
    • liana.method.cellphonedb.__call__
    • liana.method.connectome.__call__
    • liana.method.logfc.__call__
    • liana.method.natmi.__call__
    • liana.method.singlecellsignalr.__call__
    • liana.method.geometric_mean.__call__
    • liana.method.rank_aggregate.__call__
    • liana.method.bivariate.__call__
    • liana.method.MistyData
    • liana.method.genericMistyData
    • liana.method.lrMistyData
    • liana.multi.df_to_lr
    • liana.multi.to_tensor_c2c
    • liana.multi.adata_to_views
    • liana.multi.lrs_to_views
    • liana.multi.nmf
    • liana.multi.estimate_elbow
    • liana.plotting.dotplot
    • liana.plotting.dotplot_by_sample
    • liana.plotting.tileplot
    • liana.plotting.connectivity
    • liana.plotting.target_metrics
    • liana.plotting.contributions
    • liana.plotting.interactions
    • liana.utils.obsm_to_adata
    • liana.utils.mdata_to_anndata
    • liana.utils.zi_minmax
    • liana.utils.neg_to_zero
    • liana.utils.spatial_neighbors
    • liana.utils.get_factor_scores
    • liana.utils.get_variable_loadings
    • liana.utils.interpolate_adata
    • liana.resource.select_resource
    • liana.resource.show_resources
    • liana.resource.generate_lr_geneset
    • liana.resource.explode_complexes
    • liana.resource.get_metalinks
    • liana.resource.describe_metalinks
    • liana.resource.get_metalinks_values
    • liana.method.find_causalnet
    • liana.method.build_prior_network
    • liana.method.estimate_metalinks
  • Changelog
  • Contributing guide
  • References
  • .md

Tutorials

Tutorials#

  • Steady-state Ligand-Receptor inference
  • Multi-Modal Ligand-Receptor Inference
  • Prior Knowledge
  • Spatially-informed Bivariate Metrics
  • Integrating Multi-Modal Spatially-Resolved Technologies with LIANA+
  • Learning Spatial Relationships with MISTy
  • Differential Expression Analysis for CCC & Downstream Signalling Networks
  • Intercellular Context Factorization with Tensor-Cell2cell
  • MOFAcellular - Multicellular Factor Analysis
  • Intercellular Context Factorization with MOFA
  • Inferring Cell–Cell Interactions at Single Cell Resolution

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LIANA+: an all-in-one cell-cell communication framework

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Steady-state Ligand-Receptor inference

By Daniel Dimitrov, Philipp Sven Lars Schäfer, Elias Farr, Pablo Rodriguez-Mier, Sebastian Lobentanzer, Pau Badia-i-Mompel, Aurelien Dugourd, Jovan Tanevski, Ricardo Omar Ramirez Flores, Julio Saez-Rodriguez

© Copyright 2026, Daniel Dimitrov, Philipp Sven Lars Schäfer, Elias Farr, Pablo Rodriguez-Mier, Sebastian Lobentanzer, Pau Badia-i-Mompel, Aurelien Dugourd, Jovan Tanevski, Ricardo Omar Ramirez Flores, Julio Saez-Rodriguez..